Now showing items 1-4 of 4

    • Comparative Conformational Analysis Of Peptide T Analogs 

      Akverdieva, Gulnare; Godjayev, Niftali; Akyüz, Sevim (Elsevier Science Bv, Po Box 211, 1000 Ae Amsterdam, Netherlands, 2009-01-09)
      A series of peptide T analogs were investigated within the molecular mechanics framework. In order to determine the role of the aminoacid residues in spatial formation of peptide T the conformational peculiarities of the ...
    • Optimization Based Tumor Classification From Microarray Gene Expression Data 

      Dağlıyan, Onur; Üney-Yüksektepe, Fadime; Kavaklı, Halil; Türkay, Metin (Public Library Science, 185 Berry St, Ste 1300, San Francisco, Ca 94107 USA, 2011-02-04)
      Background: An important use of data obtained from microarray measurements is the classification of tumor types with respect to genes that are either up or down regulated in specific cancer types. A number of algorithms ...
    • SILAC-Based Mass Spectrometry Analysis reveals that Epibrassinolide induces apoptosis via activating Endoplasmic Reticulum stress in prostate cancer cells 

      Obakan Yerlikaya, Pınar; Barrero, Carlos; Çoker Gürkan, Ajda; Arısan, Elif Damla; Merali, Salim; Ünsal Palavan, Zeynep Narçın (Public Library Science, 1160 Battery Street, Ste 100, San Francisco, Ca 94111 Usa, 2015-09-09)
      Epibrassinolide (EBR) is a polyhydroxylated sterol derivative and biologically active compound of the brassinosteroids. In addition to well-described roles in plant growth, EBR induces apoptosis in the LNCaP prostate cancer ...
    • The effects of conformation and zwitterionic tautomerism on the structural and vibrational spectral data of anserine 

      Balcı, Kubilay; Akkaya, Yasemin; Akyüz, Sevim; Collier, W. B.; Stricker, Moogega C.; Stover, D. D.; Ritzhaupt, G.; Koch, Andreas; Kleinpeter, Erich (Elsevier Science Bv, Po Box 211, 1000 AE Amsterdam, Netherlands, 2016-09)
      In this study, the stable conformers of neutral anserine were searched by molecular dynamics simulations and energy minimization calculations using the MM2 force field. Thermochemical calculations at B3LYP/6-31G(d) level ...